PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g09430.1
Common NameLR48_Vigan01g258800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 239aa    MW: 26973.9 Da    PI: 6.7057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g09430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-191261154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                    ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + 
  Vang11g09430.1 12 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMS 61
                    59*******9.**********8.....334*********************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-341272No hitNo description
SuperFamilySSF541711.77E-201371IPR016177DNA-binding domain
PfamPF008473.8E-121360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-331370IPR001471AP2/ERF domain
PROSITE profilePS5103221.9441370IPR001471AP2/ERF domain
SMARTSM003803.2E-401376IPR001471AP2/ERF domain
PRINTSPR003671.5E-101425IPR001471AP2/ERF domain
PRINTSPR003671.5E-103652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
LNPNNTIMVQ TKKFRGVRQR HWGSWVSEIR HPLLKRRVWL GTFETAEEAA RAYDQAAILM  60
SGRNAKTNFP ITQTPEGDPK SITSEDTPSS TSKDLEEILH AKLRKCGKVP SPSMTCLRLD  120
TENSHIGVWQ KRAGRRSDSN WVMTVQLGKK STDNETHQAD SSTSLSLPSS DHHHHHRESP  180
SGVTGHHQHE EVVRGEIDEE ERIALQMIEE LLNDRNCPSP SFSNFQERDG GDDDTFFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-171271161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508448.11e-159PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI331e-77WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0S3R7551e-173A0A0S3R755_PHAAN; Uncharacterized protein
TrEMBLA0A0L9TRJ01e-173A0A0L9TRJ0_PHAAN; Uncharacterized protein
STRINGGLYMA17G12330.11e-137(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.19e-60ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]